Package index
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prettyChromoplot() - Chromosome Plot
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prettyCoOncoplot() - Side-by-side Oncoplots
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prettyForestPlot() - Forest Plot.
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prettyGeneCloud() - Gene Cloud Plot
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prettyMutationDensity() - Pretty mutation density heatmap
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prettyOncoplot() - PrettyOncoplot
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prettyRainfallPlot() - Rainfall Plot
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prettyStackedOncoplot() - Pretty stacked oncoplot
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pretty_CN_heatmap() - Pretty Copy Number Heatmap
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pretty_MAF_summary() - Pretty MAF summary
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pretty_circular_mutation_frequency_heatmap() - pretty_circular_mutation_frequency_heatmap
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pretty_lollipop_plot() - Pretty Lollipop Plot.
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pretty_mutual_exclusivity() - Pretty mutual exclusivity plot
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fancy_alignment_plot() - Plot Alignment Metrics
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fancy_cnbar() - Copy Number states barplot
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fancy_ideogram() - genome-wide ideogram annotated with SSM and CN information
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fancy_qc_plot() - Plot Quality Control Metrics.
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fancy_snv_chrdistplot() - n SNVs per chromosome plot
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fancy_sv_sizedens() - Structural Variants Size Plot.
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fancy_v_chrcount() - n variants per chromosome plot.
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fancy_v_count() - Total n variants count plot.
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fancy_v_sizedis() - Variant size distribution plot
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ashm_rainbow_plot() - ASHM Rainbow Plot
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ashm_multi_rainbow_plot() - ASHM Multi-panel Rainbow Plot
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circular_CN_plot() - Circular overview of copy number data across a cohort
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copy_number_vaf_plot() - CN VAF Plot
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focal_cn_plot() - Copy Number Segments Plot
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mutation_hotspot_logo() - Represent mutation hot spots as a sequence logo
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plot_MutationTimeR() - Plot MutationTimeR Results
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plot_sample_circos() - Sample-level Circos Plot
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splendidHeatmap() - Heatmap