Skip to contents

Summarize and Export DLBCLone Model Results

DLBCLone_summarize_model.Rd

Generates and saves a set of summary plots and tables for a DLBCLone model, including UMAP scatterplots, alluvial plots, and oncoplots. Results are saved as PDF files in a directory named after the provided base name.

Usage

DLBCLone_summarize_model(base_name, optimized_model)

Arguments

base_name

Character. The base name (and directory) for saving output files.

optimized_model

List. The output from DLBCLone optimization, containing predictions, features, and metadata.

Value

No return value. Side effect: writes multiple PDF files to disk.

Details

  • Creates a directory for results if it does not exist.

  • Saves UMAP scatterplots for all samples and for non-"Other" samples.

  • Generates alluvial plots for different DLBCLone predictions

  • Exports an oncoplot summarizing mutation and classification results.

  • Uses make_umap_scatterplot, make_alluvial, and prettyOncoplot for visualization.

Examples

if (FALSE) { # \dontrun{
DLBCLone_summarize_model(optimized_model = all_features_optimized,
                         base_name="model_summaries/Lymphgen_all_features")
} # }