Package index
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get_all_coding_ssm() - Get all Coding SSMs
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get_ashm_count_matrix() - Get ASHM Count Matrix.
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get_cn_segments() - Get CN Segments.
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get_cnv_and_ssm_status() - Get CNV and coding SSM combined status
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get_coding_ssm() - Get Coding SSMs
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get_coding_ssm_status() - Get Coding SSM Status.
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get_gambl_metadata() - Get GAMBL Metadata.
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get_manta_sv() - Get Manta SVs
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get_sample_cn_segments() - Get Sample CN Segments.
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get_ssm_by_patients() - Get SSM By Patients.
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get_ssm_by_region() - Get SSM By Region.
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get_ssm_by_regions() - Get SSM By Regions.
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get_ssm_by_samples() - Get SSM By Samples.
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annotate_hotspots() - Annotate Hotspots.
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assign_cn_to_ssm() - Assign CN to SSM.
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calc_mutation_frequency_bin_region() - Calculate Mutation Frequency By Sliding Window.
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calc_mutation_frequency_bin_regions() - Mutation counts across sliding windows for multiple regions.
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check_excess_params() - Check Excess Params
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collate_results() - Collate Results
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id_ease() - ID Ease