Get SSM By Sample. — get_ssm_by_sample • GAMBLR.open

Get the SSMs (i.e. load MAF) for a single sample.

Usage

get_ssm_by_sample(
  this_sample_id,
  these_samples_metadata = NULL,
  this_seq_type = "genome",
  projection = "grch37",
  ...
)

this_sample_id: A single sample ID to retrieve mutations for.
these_samples_metadata: Optional, a metadata table (with sample_id column) to auto-subset the data to samples in that table before returning.
this_seq_type: Default is genome.
projection: The projection genome build. Supports hg38 and grch37.
...: Any additional parameters passed to get_ssm_by_samples.

data frame in MAF format.

Alias for get_ssm_by_samples accepting a single sample ID via this_sample_id, provided for API compatibility with GAMBLR.results.


maf = get_ssm_by_sample(this_sample_id = "DOHH-2")