Get Sample Wildcards — get_sample

Get wildcards for a sample_id/seq_type combination.

get_sample_wildcards(this_sample_id, seq_type)

Arguments

this_sample_id: The sample ID of interest.
seq_type: The desired seq type, e.g genome/capture.

Value

Nothing.

Details

Return sample wildcards, useful for getting wildcard information necessary for retrieving sample-level flat-files with glue.

Examples

get_sample_wildcards(this_sample_id = "00-15201_tumorA",
                     seq_type = "genome")
#> $tumour_sample_id
#> [1] "00-15201_tumorA"
#> 
#> $normal_sample_id
#> [1] "00-15201_normal"
#> 
#> $seq_type
#> [1] "genome"
#> 
#> $pairing_status
#> [1] "matched"
#> 
#> $genome_build
#> [1] "grch37"
#> 
#> $unix_group
#> [1] "gambl"
#>