Find Files Extract Wildcards — find_files_extract

Get wildcards for a set of samples.

find_files_extract_wildcards(
  tool_results_path,
  search_pattern,
  genome_build,
  seq_type = "genome",
  unix_group = "gambl",
  tool_name
)

Arguments

tool_results_path: Optional parameter, path to results.
search_pattern: Search pattern.
genome_build: Genome projection to be used.
seq_type: Default is genome.
unix_group: Default value is gambl.
tool_name: Name of the tool.

Value

A tibble with wildcards.

Details

Specify the file extension with search_pattern and the seq type, unix group, and genome build and the function will return a tibble with sample wildcards.

Examples

file_details_manta = find_files_extract_wildcards(tool_name = "manta",
                                                  genome_build = c("hg38", "grch37"),
                                                  search_pattern = ".bed")