Get the copy number and expression for a single gene.
Usage
get_gene_cn_and_expression(gene_symbol, ensembl_id, this_seq_type = "genome")
Arguments
- gene_symbol
One or more gene symbols. Should match the values in a maf file.
- ensembl_id
One or more ensembl gene IDs. Only one of hugo_symbols or ensembl_gene_ids may be used.
- this_seq_type
Seq type for returned CN segments. One of "genome" (default) or "capture".
Value
A data frame with copy number information and gene expressions.
Details
This function works well with both Hugo Symbols and Ensembl Gene IDs.
It's also possible to specify more than one gene.
Examples
if (FALSE) { # \dontrun{
MYC_cn_expression = get_gene_cn_and_expression("MYC")
} # }